CDS

Accession Number TCMCG015C17963
gbkey CDS
Protein Id XP_027114995.1
Location complement(join(68415728..68415938,68416760..68417050,68417680..68418496,68418709..68420758))
Gene LOC113733057
GeneID 113733057
Organism Coffea arabica

Protein

Length 1122aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027259194.1
Definition phytochrome A1 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category K
Description Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
KEGG_ko ko:K12120        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04712        [VIEW IN KEGG]
map04712        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004672        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006468        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007602        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009581        [VIEW IN EMBL-EBI]
GO:0009582        [VIEW IN EMBL-EBI]
GO:0009583        [VIEW IN EMBL-EBI]
GO:0009585        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009606        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009629        [VIEW IN EMBL-EBI]
GO:0009630        [VIEW IN EMBL-EBI]
GO:0009637        [VIEW IN EMBL-EBI]
GO:0009638        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009640        [VIEW IN EMBL-EBI]
GO:0009642        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009881        [VIEW IN EMBL-EBI]
GO:0009883        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010017        [VIEW IN EMBL-EBI]
GO:0010018        [VIEW IN EMBL-EBI]
GO:0010114        [VIEW IN EMBL-EBI]
GO:0010161        [VIEW IN EMBL-EBI]
GO:0010201        [VIEW IN EMBL-EBI]
GO:0010203        [VIEW IN EMBL-EBI]
GO:0010218        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016301        [VIEW IN EMBL-EBI]
GO:0016310        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016773        [VIEW IN EMBL-EBI]
GO:0017148        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031516        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034249        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0038023        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046685        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051606        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055122        [VIEW IN EMBL-EBI]
GO:0060089        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071214        [VIEW IN EMBL-EBI]
GO:0071478        [VIEW IN EMBL-EBI]
GO:0071482        [VIEW IN EMBL-EBI]
GO:0071489        [VIEW IN EMBL-EBI]
GO:0071490        [VIEW IN EMBL-EBI]
GO:0071491        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0104004        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCAGCTTCAAGACCTAGTCAGTCTTCCAGCAGTTCAGCAAGATCAAAGCACAGTGCTCGGATAATTGCACAGACCTCCATAGATGCAAAGCTCAATGCTGATTTTGAGGAGTCAGGTAGTTCCTTTGACTATTCGAGCTCAGTGCGTGTCACACCTCCTGGAGAGCACAGACCTAGATCTGATAGGATAACCACAGCTTACCTTCATCAGATTCAGAAAGGAAAATTTATCCAGCCATTTGGATGTCTTTTAGCTCTGGATGAGAAAACTTTCAAAGTCATTGCTTATAGTGAAAATGCTCCTGAAATGCTGACCATGGTCAGTCACGCTGTTCCGAGTGTTGGTGATCATCCGGTTATTGACATTGGAACTGATATCAGAACTATTTTTACTAATCCTAGTGCAGCAGCATTGTATAAGGCCTTAGGATTTGGAGAGGTTTCTCTGCTGAATCCTATATTGGTCCACTGTAAAACTTCTGGGAAGCCGTTTTATGCCATTGTTCACAGGGTGACAGGTAGCTTAATCATTGATTTTGAGCCTGTGAAGCCTTATGAAGTCCCCATGACTGCTGCTGGTGCTTTGCAGTCCTATAAGCTTGCTGCCAAAGCCATTACACGCCTGCAGTCCCTACCCAGTGGGAGCTTGGATAGACTTTGTGATACAATGGTTCAAGAGGTTTTTGAACTGACAGGTTATGACAGGGTGATGACATATAAATTTCACGATGATGATCATGGAGAGGTGATAAGCGAAGTCACGAAGCCAGGCCTAGAGCCCTATGTGGGTCTGCATTACCCAGCTACAGATATCCCTCAGGCTGCACGCTTTTTATTCATGAAAAACAAAGTTCGCATGATATGCGACTGCCGAGCAAAACATATGAAGGTGATTCAAGATGAGAAGCTTCCTTTTGATCTTACTTTATGTGGCTCCACACTCAGGGCCCCTCATACGTGCCATTTGCAATATATGGAAAACATGACTTCAATTGCATCTCTGGTGATGGCTGTCATAATCAATGATGGGGATGATGAGGGGGATAGTTCTGAGCCTGCAGACCCTCAAAAAAGGAAAAGGCTTTGGGGATTGGTTGTGTGTCATAACACAACACCGAGATTTGTTCCTTTCCCTCTTCGGTATGCCTGTGAGTTCCTCACTCAAGTGTTTGCTATCCATGTCAGCAAGGAGTTGGAATTAGAAAATCAGATTGTTGAGAAGAACATTCTGAAAACACAGACTCTCTTGTGTGATATGCTGTTGAGTGATGCACCCTTGGGCATTGTTTCACAGAGTCCAAACATAATGGATCTTGTGAAATGTGATGGGGCGGTCTTAATGTACAAGAACGAAATACATAGAATGGGATTAACTCCAACTGACTTTCAGCTGCGTGATATAATATCCTGGCTTTCTGAGTATCACATGGATTCAACGGGTTTGAGCACAGACAGTTTATATGATGCTGGGTTCCCTGGGGCTCTTGCTCTTGGTGATGTAGTTTGTGGGATGGCAGCTGTTCGGATATCAGATAAGGACTGGCTTTTCTGGTTCAGATCACACACTGCTGCAGAGATTCGATGGGGTGGTGCAAAGCATGAACCTGGGGAGAAGGATGATGGTAGGAAGATGCATCCGAGGTCTTCATTCAAAGCATTTCTTGAAGTTGTTAAGACCAGAAGTTTAACTTGGAAGGATTATGAGATGGATGCAATCCATTCTTTGCAGCTTATACTGAGAAATTCTTCCAAGGAAGATGAGGGAACCAAGTCAGACACTCAGGAAATCCATTCAAAACTTAATGACCTCCGGATCGACGGATTGCAGGAATTGGAAGCGGTGACATCTGAAATGGTTCGGCTGATTGAGACAGCATCAGTTCCAATCTTGGCGGTTGATATTGATGGGGTGGTTAATGGGTGGAATACAAAGATTTCCGATTTAACTGGTCTTGCTGTTGATGAAGCAATTGGGAGGAAATTGCTTACCCTTGTTGAAGATTCATCGGCTGAAACAGTGAATAAGATGCTGGAATTGGCATTGCTGGGCAAAGAAGAACAAAATGTGCAATTTGAGATTAAAACACATGGATCAAAAGCTGATGCGGGCCCAGTTAGCTTGATTGTGAATGCCTGTGCAAGCAGGGATGTTAGAGGGACTGTTGTGGGTGTATGTTTTGTTGCCCAGGATATAACTGGTCAGAAGGCTATCATGGACAAGTTTACTAGAATTGAAGGTGATTACAGAGCTATTGTACAAAATCCCAACCCGTTGATTCCTCCAATATTTGGAACGGATGAATTTGGCTGGTGCTCTGAGTGGAATTCTGCCATGACAAAAGTATCTGGATGGCGTAGAGAGCAGGTTATGGATAAGATGCTTTTAGGAGAGGTTTTTGGAATTCATACAGCCTGTTGCAGGCTCAGGAATCAGGAAGCTTTTGTGAATCTTGGTATTTTACTAAACAATGCCATAAGTGGTCAAGCATCTGAAAAGATACCTTTTGGTTTCTTTGCACGGAATGGGAAGTACATAGAGTGCCTGCTCTGTGTGAGCAAAAAGCTGGATAGAGAGGGTGCAGTCACTGGGGTATTTTGCTTTCTGCAGCTGGCAAGTTACGAGTTGCAGCAGGCACTTCATATTCAAAGACTATCTGAGGAAACTGCATTGAAAAGGTTGAAGGTATTGGCTTACATAAGGATGCAGATAAGAAATCCACTGTCTGGAATTATTTTTTCAAGGAAGATGTTGGAGGACACTGAGTTGGGAGAGGATCAGAAGAATCTGCTACAAACCAGTGCCCAGTGTCAGCGTCAGCTTAACAAGATTCTTGATGACACTGATCTTGACAGCATAATTGATGGGTATTTGGATCTGGAAATGGTGGAATTCAAGCTACATGAAGTACTGGTTGCTTCCATTAGTCAAGTCATGATCAAAAGCAGTGCAAAGGGTGTTGTGATAGTGAATAATTTGGCTGAAAGTCTTATGAATGAAACTCTATATGGTGATGGACTGAGGCTTCAGCAAGTTCTAGCTGATTTCCTGTTGACATCGGTGAATTTTACACCAAATGGAGGCCAGCTGGGTCTTGGAGGAAAGTTGACTAAAGACCGATTAGGGGAGTCAGTTCAGCTTGCCCATTTGGAATTAAGGATGACACATTCTGGAGGTGGGGTTCCAGAAGAATTGCTGAACCAAATGTTCGGTACCAATGGAGAAGCATCTGATGAGGGAATAAGTCTTCTTATCAGCAGAAAACTGGTGAAGCTTATGAATGGAGATGTTCAGTACCTAAGGGAGGCGGGGCGATCGACTTTTATCATATCTGTCGAACTCGCAGTTGCTAATCAGCCTGCAGCATAG
Protein:  
MSASRPSQSSSSSARSKHSARIIAQTSIDAKLNADFEESGSSFDYSSSVRVTPPGEHRPRSDRITTAYLHQIQKGKFIQPFGCLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGDHPVIDIGTDIRTIFTNPSAAALYKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSLDRLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVISEVTKPGLEPYVGLHYPATDIPQAARFLFMKNKVRMICDCRAKHMKVIQDEKLPFDLTLCGSTLRAPHTCHLQYMENMTSIASLVMAVIINDGDDEGDSSEPADPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLTQVFAIHVSKELELENQIVEKNILKTQTLLCDMLLSDAPLGIVSQSPNIMDLVKCDGAVLMYKNEIHRMGLTPTDFQLRDIISWLSEYHMDSTGLSTDSLYDAGFPGALALGDVVCGMAAVRISDKDWLFWFRSHTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLTWKDYEMDAIHSLQLILRNSSKEDEGTKSDTQEIHSKLNDLRIDGLQELEAVTSEMVRLIETASVPILAVDIDGVVNGWNTKISDLTGLAVDEAIGRKLLTLVEDSSAETVNKMLELALLGKEEQNVQFEIKTHGSKADAGPVSLIVNACASRDVRGTVVGVCFVAQDITGQKAIMDKFTRIEGDYRAIVQNPNPLIPPIFGTDEFGWCSEWNSAMTKVSGWRREQVMDKMLLGEVFGIHTACCRLRNQEAFVNLGILLNNAISGQASEKIPFGFFARNGKYIECLLCVSKKLDREGAVTGVFCFLQLASYELQQALHIQRLSEETALKRLKVLAYIRMQIRNPLSGIIFSRKMLEDTELGEDQKNLLQTSAQCQRQLNKILDDTDLDSIIDGYLDLEMVEFKLHEVLVASISQVMIKSSAKGVVIVNNLAESLMNETLYGDGLRLQQVLADFLLTSVNFTPNGGQLGLGGKLTKDRLGESVQLAHLELRMTHSGGGVPEELLNQMFGTNGEASDEGISLLISRKLVKLMNGDVQYLREAGRSTFIISVELAVANQPAA